TEMP
type: Ontology
date: 17:05:2010 23:35
has_obo_format_version: 1.2

definition
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

linear RNA backbone of
type: ObjectProperty
sub property of: RNA backbone of
inverse of: has linear RNA backbone
domain: linear RNA backbone
id: RNAO:0000191

has linear RNA backbone
type: ObjectProperty
sub property of: has RNA backbone
id: RNAO:0000192

RNA backbone of
type: ObjectProperty
sub property of: submolecule of
inverse of: has RNA backbone
domain: RNA backbone
id: RNAO:0000220

has RNA backbone
type: ObjectProperty
sub property of: has submolecule
id: RNAO:0000221

has direct part
type: ObjectProperty
sub property of: ro.owl#has proper part
inverse of: direct part of
id: RNAO:0000222

direct part of
type: ObjectProperty
sub property of: ro.owl#proper part of
id: RNAO:0000223

connected to
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty
id: RNAO:0000300

covalently connected to (transitive)
type: ObjectProperty
sub property of: connected to
type: TransitiveProperty
domain: submolecule
range: submolecule
id: RNAO:0000301

covalently bonded to (transitive)
type: ObjectProperty
sub property of: covalently connected to (transitive)
type: TransitiveProperty
domain: atom
range: atom
id: RNAO:0000302

covalently bonded to
type: ObjectProperty
sub property of: covalently bonded to (transitive)
type: SymmetricProperty
domain: atom
range: atom
id: RNAO:0000303

covalently connected to
type: ObjectProperty
sub property of: covalently connected to (transitive)
type: SymmetricProperty
id: RNAO:0000304

backbone connected to
type: ObjectProperty
sub property of: covalently connected to
domain: nucleotide residue
range: nucleotide residue
id: RNAO:0000305

covalently connected 5prime to 5prime
type: ObjectProperty
sub property of: backbone connected to
type: FunctionalProperty
type: SymmetricProperty
id: RNAO:0000306

covalently connected 5prime to 3prime
type: ObjectProperty
sub property of: backbone connected to
inverse of: covalently connected 3prime to 5prime
type: FunctionalProperty
id: RNAO:0000307

covalently connected 5prime to 2prime
type: ObjectProperty
sub property of: backbone connected to
inverse of: covalently connected 2prime to 5prime
type: FunctionalProperty
id: RNAO:0000308

covalently connected 3prime to 5prime
type: ObjectProperty
sub property of: backbone connected to
type: FunctionalProperty
id: RNAO:0000309

covalently connected 3prime to 3prime
type: ObjectProperty
sub property of: backbone connected to
type: FunctionalProperty
type: SymmetricProperty
id: RNAO:0000310

covalently connected 3prime to 2prime
type: ObjectProperty
sub property of: backbone connected to
inverse of: covalently connected 2prime to 3prime
type: FunctionalProperty
id: RNAO:0000311

covalently connected 2prime to 5prime
type: ObjectProperty
sub property of: backbone connected to
type: FunctionalProperty
id: RNAO:0000312

covalently connected 2prime to 3prime
type: ObjectProperty
sub property of: backbone connected to
type: FunctionalProperty
id: RNAO:0000313

weakly interacting with (transitive)
type: ObjectProperty
sub property of: connected to
type: SymmetricProperty
type: TransitiveProperty
id: RNAO:0000315

weakly interacting with
type: ObjectProperty
sub property of: weakly interacting with (transitive)
type: SymmetricProperty
id: RNAO:0000316

pairs with
type: ObjectProperty
sub property of: weakly interacting with
domain: ribonucleotide residue
id: RNAO:0000317

stacks with
type: ObjectProperty
sub property of: weakly interacting with
type: SymmetricProperty
domain: nucleotide residue
range: nucleotide residue
id: RNAO:0000318

stacks 5prime face to 5prime face
type: ObjectProperty
sub property of: stacks with
type: SymmetricProperty
id: RNAO:0000319

stacks 5prime face to 3prime face
type: ObjectProperty
sub property of: stacks with
inverse of: stacks 3prime face to 5prime face
id: RNAO:0000320

stacks 3prime face to 5prime face
type: ObjectProperty
sub property of: stacks with
id: RNAO:0000321

stacks 3prime face to 3prime face
type: ObjectProperty
sub property of: stacks with
type: SymmetricProperty
id: RNAO:0000322

pairs with HH
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000323

pairs with CHH
type: ObjectProperty
sub property of: pairs with HH
type: FunctionalProperty
id: RNAO:0000324

pairs with THH
type: ObjectProperty
sub property of: pairs with HH
type: FunctionalProperty
id: RNAO:0000325

pairs with HS
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000326

pairs with CHS
type: ObjectProperty
sub property of: pairs with HS
inverse of: pairs with CSH
type: FunctionalProperty
id: RNAO:0000327

pairs with THS
type: ObjectProperty
sub property of: pairs with HS
inverse of: pairs with TSH
type: FunctionalProperty
id: RNAO:0000328

pairs with HW
type: ObjectProperty
sub property of: pairs with
inverse of: pairs with WH
type: FunctionalProperty
id: RNAO:0000329

pairs with CHW
type: ObjectProperty
sub property of: pairs with HW
inverse of: pairs with CWH
type: FunctionalProperty
id: RNAO:0000330

pairs with THW
type: ObjectProperty
sub property of: pairs with HW
inverse of: pairs with TWH
type: FunctionalProperty
id: RNAO:0000331

pairs with SH
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000332

pairs with CSH
type: ObjectProperty
sub property of: pairs with SH
type: FunctionalProperty
id: RNAO:0000333

pairs with TSH
type: ObjectProperty
sub property of: pairs with SH
type: FunctionalProperty
id: RNAO:0000334

pairs with SS
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000335

pairs with CSS
type: ObjectProperty
sub property of: pairs with SS
type: FunctionalProperty
id: RNAO:0000336

pairs with TSS
type: ObjectProperty
sub property of: pairs with SS
type: FunctionalProperty
id: RNAO:0000337

pairs with SW
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000338

pairs with CSW
type: ObjectProperty
sub property of: pairs with SW
inverse of: pairs with CWS
type: FunctionalProperty
id: RNAO:0000339

pairs with TSW
type: ObjectProperty
sub property of: pairs with SW
inverse of: pairs with TWS
type: FunctionalProperty
id: RNAO:0000340

pairs with WH
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000341

pairs with CWH
type: ObjectProperty
sub property of: pairs with WH
type: FunctionalProperty
id: RNAO:0000342

pairs with TWH
type: ObjectProperty
sub property of: pairs with WH
type: FunctionalProperty
id: RNAO:0000343

pairs with WS
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000344

pairs with CWS
type: ObjectProperty
sub property of: pairs with WS
type: FunctionalProperty
id: RNAO:0000345

pairs with TWS
type: ObjectProperty
sub property of: pairs with WS
type: FunctionalProperty
id: RNAO:0000346

pairs with WW
type: ObjectProperty
sub property of: pairs with
type: FunctionalProperty
id: RNAO:0000347

pairs with CWW
type: ObjectProperty
sub property of: pairs with WW
type: FunctionalProperty
type: SymmetricProperty
id: RNAO:0000348

pairs with TWW
type: ObjectProperty
sub property of: pairs with WW
type: FunctionalProperty
type: SymmetricProperty
id: RNAO:0000349

boundary of
type: ObjectProperty
inverse of: has boundary
id: RNAO:0000350

external boundary of
type: ObjectProperty
sub property of: boundary of
inverse of: has external boundary
id: RNAO:0000351

has boundary
type: ObjectProperty
id: RNAO:0000352

has external boundary
type: ObjectProperty
sub property of: has boundary
id: RNAO:0000353

has member
type: ObjectProperty
sub property of: ro.owl#has part
inverse of: member of
id: RNAO:0000354

member of
type: ObjectProperty
sub property of: ro.owl#part of
id: RNAO:0000355

subcollection of
type: ObjectProperty
sub property of: ro.owl#part of
inverse of: has subcollection
id: RNAO:0000356

submolecule of
type: ObjectProperty
sub property of: ro.owl#part of
inverse of: has submolecule
domain: part of molecule
id: RNAO:0000357

has submolecule
type: ObjectProperty
sub property of: ro.owl#has part
id: RNAO:0000358

has subcollection
type: ObjectProperty
sub property of: ro.owl#has part
id: RNAO:0000359

overlaps
type: ObjectProperty
id: RNAO:0000360

covalently bonded sum of
type: ObjectProperty
id: RNAO:0000361

same chain
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty
id: RNAO:0000362

corresponds to
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty
id: RNAO:0000363

corresponds to, nucleotide by nucleotide
type: ObjectProperty
sub property of: corresponds to
type: SymmetricProperty
id: RNAO:0000364

suite of
type: ObjectProperty
sub property of: submolecule of
inverse of: has suite
id: RNAO:0000365

has suite
type: ObjectProperty
sub property of: has submolecule
id: RNAO:0000366

has face
type: ObjectProperty
sub property of: has boundary
inverse of: face of
id: RNAO:0000367

face of
type: ObjectProperty
sub property of: boundary of
type: FunctionalProperty
domain: nucleobase face
range: nucleotide residue
id: RNAO:0000368

5prime face of
type: ObjectProperty
sub property of: face of
inverse of: has 5prime face
type: FunctionalProperty
domain: 5prime face
id: RNAO:0000369

3prime face of
type: ObjectProperty
sub property of: face of
inverse of: has 3prime face
type: FunctionalProperty
domain: 3prime face
id: RNAO:0000370

has 5prime face
type: ObjectProperty
sub property of: has face
type: FunctionalProperty
id: RNAO:0000371

has 3prime face
type: ObjectProperty
sub property of: has face
type: FunctionalProperty
id: RNAO:0000372

has edge
type: ObjectProperty
sub property of: has boundary
inverse of: edge of
id: RNAO:0000373

edge of
type: ObjectProperty
sub property of: boundary of
type: FunctionalProperty
domain: nucleoside edge
range: nucleotide residue
id: RNAO:0000374

has sugar edge
type: ObjectProperty
sub property of: has edge
inverse of: is sugar edge of
type: FunctionalProperty
id: RNAO:0000375

has Hoogsteen edge
type: ObjectProperty
sub property of: has edge
inverse of: is Hoogsteen edge of
type: FunctionalProperty
id: RNAO:0000376

has Watson-Crick edge
type: ObjectProperty
sub property of: has edge
inverse of: is Watson-Crick edge of
type: FunctionalProperty
id: RNAO:0000377

is Hoogsteen edge of
type: ObjectProperty
sub property of: edge of
type: FunctionalProperty
domain: Hoogsteen edge
id: RNAO:0000378

is sugar edge of
type: ObjectProperty
sub property of: edge of
type: FunctionalProperty
domain: sugar edge
id: RNAO:0000379

is Watson-Crick edge of
type: ObjectProperty
sub property of: edge of
type: FunctionalProperty
domain: Watson-Crick edge
id: RNAO:0000380

sum of collection
type: ObjectProperty
domain: snap#MaterialEntity
range: collection of material entities
id: RNAO:0000381

covalently connected 5prime to 3prime (transitive)
type: ObjectProperty
sub property of: obsolete relation
type: TransitiveProperty
id: RNAO:0000382

covalently connected 3prime to 5prime (transitive)
type: ObjectProperty
sub property of: obsolete relation
type: TransitiveProperty
id: RNAO:0000383

hydrogen bonds with
type: ObjectProperty
sub property of: weakly interacting with
type: SymmetricProperty
domain: atom
range: atom
id: RNAO:0000459

obsolete relation
type: ObjectProperty
id: ObjectProperty1243973897611439000

RNAO isosteric with
type: ObjectProperty
sub property of: obsolete relation
type: SymmetricProperty
id: RNAO_isosteric_with

RNAO near isosteric with
type: ObjectProperty
sub property of: obsolete relation
type: SymmetricProperty
id: RNAO_near_isosteric_with

has functional parent
type: ObjectProperty
sub property of: owl#topObjectProperty
id: has_functional_parent

interacts with 0BPh
type: ObjectProperty
sub property of: interacts with HPh
domain: ribonucleotide residue
id: interacts_with_0BPh

interacts with 1BPh
type: ObjectProperty
sub property of: obsolete relation
domain: guanylate residue
range: phosphate moiety
id: interacts_with_1BPh

interacts with 2BPh
type: ObjectProperty
sub property of: obsolete relation
domain: adenylate residue
range: phosphate moiety
id: interacts_with_2BPh

interacts with 3BPh
type: ObjectProperty
sub property of: interacts with WPh
domain: guanylate residue
range: phosphate moiety
id: interacts_with_3BPh

interacts with 4BPh
type: ObjectProperty
sub property of: interacts with WPh
domain: guanylate residue
range: phosphate moiety
id: interacts_with_4BPh

interacts with 5BPh
type: ObjectProperty
sub property of: interacts with WPh
range: phosphate moiety
id: interacts_with_5BPh

interacts with 6BPh
type: ObjectProperty
sub property of: interacts with WPh
range: phosphate moiety
id: interacts_with_6BPh

interacts with 7BPh
type: ObjectProperty
sub property of: interacts with HPh
range: phosphate moiety
id: interacts_with_7BPh

interacts with 8BPh
type: ObjectProperty
sub property of: interacts with HPh
domain: cytidylate residue
range: phosphate moiety
id: interacts_with_8BPh

interacts with 9BPh
type: ObjectProperty
sub property of: interacts with HPh
domain: pyrimidine ribonucleotide
range: phosphate moiety
id: interacts_with_9BPh

interacts with HPh
type: ObjectProperty
sub property of: obsolete relation
domain: ribonucleotide residue
range: phosphate moiety
id: interacts_with_HPh

interacts with WPh
type: ObjectProperty
sub property of: obsolete relation
domain: ribonucleotide residue
range: phosphate moiety
id: interacts_with_WPh

owl#topObjectProperty
type: ObjectProperty
id: owl#topObjectProperty

ro.owl#has part
type: ObjectProperty
id: ro.owl#has_part

ro.owl#has proper part
type: ObjectProperty
id: ro.owl#has_proper_part

has quality
type: ObjectProperty
id: ro.owl#has_quality

ro.owl#part of
type: ObjectProperty
id: ro.owl#part_of

ro.owl#proper part of
type: ObjectProperty
id: ro.owl#proper_part_of

5,6-dihydrouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: CHEBI:15901

1-methyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:16020

beta-D-galactosyl group
type: Class
subclass of: group
id: CHEBI:16289

hypoxanthine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: CHEBI:17368

inosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:17596

pseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:17802

1-methylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: CHEBI:19062

1-methylinosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:19065

1-methylpseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:19068

2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:19227

2prime-O-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: CHEBI:19228

2prime-O-methylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: CHEBI:19229

2prime-O-methylpseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:19231

N2,N2-dimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: CHEBI:19289

2-methyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:19688

N2-methylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: CHEBI:19702

2-thiocytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: CHEBI:19780

3-(3-amino-3-carboxypropyl)uridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:19928

3-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: CHEBI:20129

N4-acetylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: CHEBI:20305

4-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20480

5-(carboxyhydroxymethyl)uridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20530

5-carboxymethylaminomethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20555

5-methoxycarbonylmethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20597

5-methoxycarbonylmethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20598

5-methoxyuridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20601

5-methyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:20602

5-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: CHEBI:20607

7-methylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: CHEBI:20794

N6-methyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:21891

glutamyl group
type: Class
subclass of: group
id: CHEBI:22453

3-amino-3-carboxypropyl group
type: Class
subclass of: group
id: CHEBI:22832

carbamoyl group
type: Class
subclass of: group
id: CHEBI:23004

dihydrouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:23774

group
type: Class
subclass of: submolecule
id: CHEBI:24433

hydroxymethyl group
type: Class
subclass of: group
id: CHEBI:24712

mannosyl group
type: Class
subclass of: group
id: CHEBI:25170

oxygen atom
type: Class
subclass of: atom
id: CHEBI:25805

hydroperoxyl
type: Class
subclass of: group
id: CHEBI:25935

prenyl group
type: Class
subclass of: group
id: CHEBI:26248

ribosyl group
type: Class
subclass of: group
id: CHEBI:26565

sulfur atom
type: Class
subclass of: atom
id: CHEBI:26833

tauryl group
type: Class
subclass of: group
id: CHEBI:26861

uridine 5-oxyacetic acid residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: CHEBI:27240

selenium atom
type: Class
subclass of: atom
id: CHEBI:27568

carbon atom
type: Class
subclass of: atom
id: CHEBI:27594

N6,N6-dimethyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: CHEBI:28284

phosphorous atom
type: Class
subclass of: atom
id: CHEBI:28659

hydrogen atom
type: Class
subclass of: atom
id: CHEBI:29235

nitrogen atom
type: Class
subclass of: atom
id: CHEBI:29351

methyl group
type: Class
subclass of: group
id: CHEBI:32875

phosphate group
type: Class
subclass of: group
id: CHEBI:32958

atom
type: Class
subclass of: snap#MaterialEntity
id: CHEBI:33250

threonyl group
type: Class
subclass of: group
id: CHEBI:37900

lysyl group
type: Class
subclass of: group
id: CHEBI:37903

acetyl group
type: Class
subclass of: group
id: CHEBI:40574

carboxymethyl group
type: Class
subclass of: group
id: CHEBI:41402

formyl group
type: Class
subclass of: group
id: CHEBI:42485

hydroxy group
type: Class
subclass of: group
id: CHEBI:43176

methylamino group
type: Class
subclass of: group
id: CHEBI:44209

methoxy group
type: Class
subclass of: group
id: CHEBI:44520

oxo group
type: Class
subclass of: group
id: CHEBI:46629

glycyl group
type: Class
subclass of: group
id: CHEBI:46740

amino group
type: Class
subclass of: group
id: CHEBI:46882

carboxy group
type: Class
subclass of: group
id: CHEBI:46883

cyano group
type: Class
subclass of: group
id: CHEBI:48819

ribonucleic acid
type: Class
subclass of: nucleic acid
id: RNAO:0000000

base pair
type: Class
subclass of: snap#MaterialEntity
definition: A base pair consists of a pair of nucleotide residues that interact by nucleoside edge to nucleoside edge hydrogen bonds.
id: RNAO:0000001

Axiom
annotated source: base pair
annotated property: definition
annotated target: A base pair consists of a pair of nucleotide residues that interact by nucleoside edge to nucleoside edge hydrogen bonds.
database_cross_reference: RNAO:ROC

deoxyribose ring
type: Class
subclass of: furanose ring
definition: A ribose ring that does not have a hydroxy group at the 2prime position.
id: RNAO:0000002

Axiom
annotated source: deoxyribose ring
annotated property: definition
annotated target: A ribose ring that does not have a hydroxy group at the 2prime position.
database_cross_reference: RNAO:ROC

family 1 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_1_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000003

Axiom
annotated source: family 1 base pair
annotated property: definition
annotated target: A family_1_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 2 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_2_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000004

Axiom
annotated source: family 2 base pair
annotated property: definition
annotated target: A family_2_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

family 3 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_3_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000005

Axiom
annotated source: family 3 base pair
annotated property: definition
annotated target: A family_3_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 4 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_4_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000006

Axiom
annotated source: family 4 base pair
annotated property: definition
annotated target: A family_4_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

family 5 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_5_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000007

Axiom
annotated source: family 5 base pair
annotated property: definition
annotated target: A family_5_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 6 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_6_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000008

Axiom
annotated source: family 6 base pair
annotated property: definition
annotated target: A family_6_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

family 7 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_7_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000009

Axiom
annotated source: family 7 base pair
annotated property: definition
annotated target: A family_7_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 8 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_8_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000010

Axiom
annotated source: family 8 base pair
annotated property: definition
annotated target: A family_8_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

family 9 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_9_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000011

Axiom
annotated source: family 9 base pair
annotated property: definition
annotated target: A family_9_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 10 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_10_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000012

Axiom
annotated source: family 10 base pair
annotated property: definition
annotated target: A family_10_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

family 11 base pair
type: Class
subclass of: cis-oriented base pair
definition: A family_11_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
id: RNAO:0000013

Axiom
annotated source: family 11 base pair
annotated property: definition
annotated target: A family_11_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
database_cross_reference: RNAO:ROC

family 12 base pair
type: Class
subclass of: trans-oriented base pair
definition: A family_12_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
id: RNAO:0000014

Axiom
annotated source: family 12 base pair
annotated property: definition
annotated target: A family_12_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
database_cross_reference: RNAO:ROC

RNA suite
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: has quality
  some values from: backbone conformation
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribonucleic acid
id: RNAO:0000015

canonical RNA base pair
type: Class
subclass of: cis-oriented base pair
definition: An RNAO_base_pair which has cis-Watson--Crick pairing and where the participating bases are AU, CG, GC or UA.
id: RNAO:0000016

Axiom
annotated source: canonical RNA base pair
annotated property: definition
annotated target: An RNAO_base_pair which has cis-Watson--Crick pairing and where the participating bases are AU, CG, GC or UA.
database_cross_reference: RNAO:ROC

nucleobase
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: ro.owl#part of
  some values from: nucleoside residue
definition: A nucleobase is an N-heterocyclic group that forms part of a nucleoside residue.
id: RNAO:0000017

Axiom
annotated source: nucleobase
annotated property: definition
annotated target: A nucleobase is an N-heterocyclic group that forms part of a nucleoside residue.
database_cross_reference: RNAO:ROC

phosphate moiety
type: Class
subclass of: submolecule
definition: A phosphate group consists of a phosphorus atom doubly-bonded to two oxygen atoms and singly-bonded to two oxygen atoms, both of which have a free valence. Unlike the phosphate group in ChEBI (CHEBI:32958), the RNAO phosphate group has two free valences.
id: RNAO:0000018

Axiom
annotated source: phosphate moiety
annotated property: definition
annotated target: A phosphate group consists of a phosphorus atom doubly-bonded to two oxygen atoms and singly-bonded to two oxygen atoms, both of which have a free valence. Unlike the phosphate group in ChEBI (CHEBI:32958), the RNAO phosphate group has two free valences.
database_cross_reference: RNAO:ROC

ribonucleoside residue
type: Class
subclass of: nucleoside residue
subclass of: Restriction
  on property: has direct part
  some values from: ribose ring
definition: A ribonucleoside consists of a nitrogen heterocycle (a nucleobase) covalently bonded to a ribose ring, with free valences at the 3prime oxgen and 5prime oxygen atoms on the ring.
id: RNAO:0000019

Axiom
annotated source: ribonucleoside residue
annotated property: definition
annotated target: A ribonucleoside consists of a nitrogen heterocycle (a nucleobase) covalently bonded to a ribose ring, with free valences at the 3prime oxgen and 5prime oxygen atoms on the ring.
database_cross_reference: RNAO:ROC

ribonucleotide residue
type: Class
subclass of: nucleotide residue
definition: A ribonucleotide residue consists of a nitrogen heterocyclic group covalently bonded to the 1prime position of a ribose ring and a phosphate group covalently bonded the 5' oxygen of the ribose ring. There are free valances at the 3'-oxygen of the ribose and on the phosphorus atom of the phosphate group where the ribonucleotide is connected to two other ribonucleotides in the chain.
id: RNAO:0000020

Axiom
annotated source: ribonucleotide residue
annotated property: definition
annotated target: A ribonucleotide residue consists of a nitrogen heterocyclic group covalently bonded to the 1prime position of a ribose ring and a phosphate group covalently bonded the 5' oxygen of the ribose ring. There are free valances at the 3'-oxygen of the ribose and on the phosphorus atom of the phosphate group where the ribonucleotide is connected to two other ribonucleotides in the chain.
database_cross_reference: RNAO:ROC

ribose ring
type: Class
subclass of: furanose ring
definition: A ribose ring is a furanose ring with free valences at the 4prime position (to bond to the nucleobase), and the 3prime and 5prime positions.
id: RNAO:0000021

Axiom
annotated source: ribose ring
annotated property: definition
annotated target: A ribose ring is a furanose ring with free valences at the 4prime position (to bond to the nucleobase), and the 3prime and 5prime positions.
database_cross_reference: RNAO:ROC

2prime hydroxyl group
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000022

purine nucleobase
type: Class
subclass of: nucleobase
definition: A purine nucleobase is a heterocyclic group consisting of a five-membered aromatic ring ortho,para-fused to a six-membered aromatic ring and where the atoms at the 1-, 3-, 7- and 9- positions are nitrogen atoms.
id: RNAO:0000023

Axiom
annotated source: purine nucleobase
annotated property: definition
annotated target: A purine nucleobase is a heterocyclic group consisting of a five-membered aromatic ring ortho,para-fused to a six-membered aromatic ring and where the atoms at the 1-, 3-, 7- and 9- positions are nitrogen atoms.
database_cross_reference: RNAO:ROC

pyrimidine nucleobase
type: Class
subclass of: nucleobase
definition: A pyrimidine nucleobase is a heterocyclic group consisting of a six-membered ring where the atoms at the 1- and 3-positions are nitrogen atoms.
id: RNAO:0000024

Axiom
annotated source: pyrimidine nucleobase
annotated property: definition
annotated target: A pyrimidine nucleobase is a heterocyclic group consisting of a six-membered ring where the atoms at the 1- and 3-positions are nitrogen atoms.
database_cross_reference: RNAO:ROC

cytosine nucleobase
type: Class
subclass of: pyrimidine nucleobase
definition: A cytosine nucleobase is a pyrimidine that contains a 4-amino group and a 2-oxo group and has a free valence at the 1-position.
id: RNAO:0000025

Axiom
annotated source: cytosine nucleobase
annotated property: definition
annotated target: A cytosine nucleobase is a pyrimidine that contains a 4-amino group and a 2-oxo group and has a free valence at the 1-position.
database_cross_reference: RNAO:ROC

uracil nucleobase
type: Class
subclass of: pyrimidine nucleobase
definition: A uracil nucleobase is a pyrimidine nucleobase that contains a 2-oxo group and a 4-oxo group and has a free valence at the 1-position.
id: RNAO:0000026

Axiom
annotated source: uracil nucleobase
annotated property: definition
annotated target: A uracil nucleobase is a pyrimidine nucleobase that contains a 2-oxo group and a 4-oxo group and has a free valence at the 1-position.
database_cross_reference: RNAO:ROC

adenine nucleobase
type: Class
subclass of: purine nucleobase
definition: An adenine nucleobase is a purine nucleobase that contains a 6-amino group and a free valence at the 9-position.
id: RNAO:0000027

Axiom
annotated source: adenine nucleobase
annotated property: definition
annotated target: An adenine nucleobase is a purine nucleobase that contains a 6-amino group and a free valence at the 9-position.
database_cross_reference: RNAO:ROC

guanine nucleobase
type: Class
subclass of: purine nucleobase
definition: A guanine nucleobase is a purine nucleobase that contains a 2-amino group, a 6-oxo group and a free valence at the 9-position.
id: RNAO:0000028

Axiom
annotated source: guanine nucleobase
annotated property: definition
annotated target: A guanine nucleobase is a purine nucleobase that contains a 2-amino group, a 6-oxo group and a free valence at the 9-position.
database_cross_reference: RNAO:ROC

22 conformation
type: Class
subclass of: backbone conformation
id: RNAO:0000029

23 conformation
type: Class
subclass of: backbone conformation
id: RNAO:0000030

32 conformation
type: Class
subclass of: backbone conformation
id: RNAO:0000031

purine ribonucleoside residue
type: Class
subclass of: ribonucleoside residue
id: RNAO:0000032

33 conformation
type: Class
subclass of: backbone conformation
id: RNAO:0000033

pyrimidine ribonucleoside residue
type: Class
subclass of: ribonucleoside residue
id: RNAO:0000034

cytidine residue
type: Class
subclass of: pyrimidine ribonucleoside residue
id: RNAO:0000035

uridine residue
type: Class
subclass of: pyrimidine ribonucleoside residue
id: RNAO:0000036

adenosine residue
type: Class
subclass of: purine ribonucleoside residue
subclass of: Restriction
  on property: ro.owl#has part
  some values from: adenine nucleobase
id: RNAO:0000037

guanosine residue
type: Class
subclass of: purine ribonucleoside residue
subclass of: Restriction
  on property: ro.owl#has part
  some values from: guanine nucleobase
id: RNAO:0000038

1a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000039

1c conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000040

1e conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000041

1f conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000042

1g conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000043

1l conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000044

1m conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000045

3a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000046

3d conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000047

5a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000048

5d conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000049

5j conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000050

5n conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000051

7a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000052

7d conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000053

9a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000054

&a conformation
type: Class
subclass of: 33 conformation
id: RNAO:0000055

1[ conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000056

1o conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000057

1t conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000058

1z conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000059
label: 3b conformation

5p conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000060

5q conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000061

5r conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000062

5z conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000063

7p conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000064

7r conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000065

1b conformation
type: Class
subclass of: 32 conformation
id: RNAO:0000066

0a conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000067

0i conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000068

0k conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000069

2a conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000070

2g conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000071

2h conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000072

4a conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000073

4d conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000074

4g conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000075

4n conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000076

6d conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000077

6g conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000078

8d conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000079

6n conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000080

6j conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000081

0b conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000082

2[ conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000083

2o conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000084

2u conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000085

2z conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000086

4b conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000087

4p conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000088

4s conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000089

6p conformation
type: Class
subclass of: 22 conformation
id: RNAO:0000090

nucleoside edge
type: Class
subclass of: boundary
definition: A nucleoside edge is either a Watson-Crick edge or a Hoogsteen edge or a sugar edge.
id: RNAO:0000091

Axiom
annotated source: nucleoside edge
annotated property: definition
annotated target: A nucleoside edge is either a Watson-Crick edge or a Hoogsteen edge or a sugar edge.
database_cross_reference: RNAO:ROC

Watson-Crick edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: nucleobase
definition: The Watson-Crick edge of a nucleobase is the preferred edge along which it undergoes hydrogen bonding with other nucleobases.
id: RNAO:0000092

Axiom
annotated source: Watson-Crick edge
annotated property: definition
annotated target: The Watson-Crick edge of a nucleobase is the preferred edge along which it undergoes hydrogen bonding with other nucleobases.
database_cross_reference: RNAO:ROC

Hoogsteen edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: nucleobase
definition: The Hoogsteen edge of a nucleobase is the edge of the nucleobase which is not adjacent to the 2prime-hydroxyl group on the ribose ring.
id: RNAO:0000093

Axiom
annotated source: Hoogsteen edge
annotated property: definition
annotated target: The Hoogsteen edge of a nucleobase is the edge of the nucleobase which is not adjacent to the 2prime-hydroxyl group on the ribose ring.
database_cross_reference: RNAO:ROC

sugar edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: ribonucleoside residue
definition: The sugar edge of a nucleoside consists of the edge of the nucleobase adjacent ot the 2prime-hydroxyl group on the ribose ring and the 2prime-hydroxyl group on the ribose ring.
id: RNAO:0000094

Axiom
annotated source: sugar edge
annotated property: definition
annotated target: The sugar edge of a nucleoside consists of the edge of the nucleobase adjacent ot the 2prime-hydroxyl group on the ribose ring and the 2prime-hydroxyl group on the ribose ring.
database_cross_reference: RNAO:ROC

paired region
type: Class
subclass of: collection of nucleotides residues
subclass of: Restriction
  on property: ro.owl#has proper part
  some values from: base pair
definition: A collection of one or more adjacent nucleotide residues in which at least one residue is part of a base pair.
id: RNAO:0000095

Axiom
annotated source: paired region
annotated property: definition
annotated target: A collection of one or more adjacent nucleotide residues in which at least one residue is part of a base pair.
database_cross_reference: RNAO:ROC

unpaired region
type: Class
subclass of: collection of nucleotides residues
definition: A collection of one or more nucleotides that are not involved in base pairing.
id: RNAO:0000096

Axiom
annotated source: unpaired region
annotated property: definition
annotated target: A collection of one or more nucleotides that are not involved in base pairing.
database_cross_reference: RNAO:ROC

unbroken stem
type: Class
subclass of: paired region
definition: A paired region made up of two contiguous collections of nucleotides, in which each nucleotide forms a base pair.
id: RNAO:0000097

Axiom
annotated source: unbroken stem
annotated property: definition
annotated target: A paired region made up of two contiguous collections of nucleotides, in which each nucleotide forms a base pair.
database_cross_reference: RNAO:ROC

terminal loop
type: Class
subclass of: collection of nucleotides residues
definition: A contiguous sequence of nucleotide residues that directly links the two halves of an unbroken stem (but does not participate in the stem); this structure is also known as a "hairpin loop". Because a terminal loop may also participate in other inter-base interactions, (a) it is defined relative to a particular unbroken_stem, and (b) it is not implicitly defined as unpaired (or paired).
id: RNAO:0000098

Axiom
annotated source: terminal loop
annotated property: definition
annotated target: A contiguous sequence of nucleotide residues that directly links the two halves of an unbroken stem (but does not participate in the stem); this structure is also known as a "hairpin loop". Because a terminal loop may also participate in other inter-base interactions, (a) it is defined relative to a particular unbroken_stem, and (b) it is not implicitly defined as unpaired (or paired).
database_cross_reference: RNAO:ROC

internal loop
type: Class
subclass of: collection of nucleotides residues
definition: A collection of nucleotide residues that link two given unbroken_stems.
id: RNAO:0000099

Axiom
annotated source: internal loop
annotated property: definition
annotated target: A collection of nucleotide residues that link two given unbroken_stems.
database_cross_reference: RNAO:ROC

purine ribonucleotide
type: Class
subclass of: ribonucleotide residue
id: RNAO:0000100

pyrimidine ribonucleotide
type: Class
subclass of: ribonucleotide residue
id: RNAO:0000101

cytidylate residue
type: Class
subclass of: pyrimidine ribonucleotide
id: RNAO:0000102

uridylate residue
type: Class
subclass of: pyrimidine ribonucleotide
id: RNAO:0000103

adenylate residue
type: Class
subclass of: purine ribonucleotide
id: RNAO:0000104

guanylate residue
type: Class
subclass of: purine ribonucleotide
id: RNAO:0000105

stem junction
type: Class
subclass of: collection of nucleotides residues
definition: A collection of nucleotide residues consisting of all and only the nucleotide regions that link more than two unbroken stems such that each region links exactly two unbroken stems. This term is defined relative to the particular unbroken_stems involved and, again, does not imply anything about the pairedness/unpairedness of the bases in this region. The degree of a junction is a property (e.g. 3-junction, 4-junction), so the different degrees do not get separate entries in the ontology.
id: RNAO:0000106

Axiom
annotated source: stem junction
annotated property: definition
annotated target: A collection of nucleotide residues consisting of all and only the nucleotide regions that link more than two unbroken stems such that each region links exactly two unbroken stems. This term is defined relative to the particular unbroken_stems involved and, again, does not imply anything about the pairedness/unpairedness of the bases in this region. The degree of a junction is a property (e.g. 3-junction, 4-junction), so the different degrees do not get separate entries in the ontology.
database_cross_reference: RNAO:ROC

strand end
type: Class
subclass of: collection of nucleotides residues
definition: A sequence_region bounded at one end by the 5prime or 3prime end of the molecule, and at the other by an unbroken_stem.
id: RNAO:0000107

Axiom
annotated source: strand end
annotated property: definition
annotated target: A sequence_region bounded at one end by the 5prime or 3prime end of the molecule, and at the other by an unbroken_stem.
database_cross_reference: RNAO:ROC

collection of nucleotides residues
type: Class
subclass of: collection of biopolymer residues
subclass of: Restriction
  on property: ro.owl#part of
  some values from: nucleic acid
definition: A collection of nucleotide residues is a part of a nucleic acid consisting of one or more nucleotides.
id: RNAO:0000108

Axiom
annotated source: collection of nucleotides residues
annotated property: definition
annotated target: A collection of nucleotide residues is a part of a nucleic acid consisting of one or more nucleotides.
database_cross_reference: RNAO:ROC

3prime end
type: Class
subclass of: terminal boundary of linear biopolymer
id: RNAO:0000109

collection of material entities
type: Class
subclass of: snap#MaterialEntity
subclass of: Restriction
  on property: has member
  some values from: snap#MaterialEntity
id: RNAO:0000110

5prime end
type: Class
subclass of: terminal boundary of linear biopolymer
id: RNAO:0000111

conformation
type: Class
subclass of: snap#Quality
definition: The spatial arrangement of the atoms in a molecule or molecular part affording distinction between stereoisomers which can be interconverted by rotations about formally single bonds.
id: RNAO:0000112

Axiom
annotated source: conformation
annotated property: definition
annotated target: The spatial arrangement of the atoms in a molecule or molecular part affording distinction between stereoisomers which can be interconverted by rotations about formally single bonds.
database_cross_reference: RNAO:ROC

base pair orientation
type: Class
subclass of: conformation
definition: A conformation that inheres in an RNA base pair. It may be cis- or trans- depending on the orientations of the ribose rings relative to the edge-edge interaction of the nucleobases.
id: RNAO:0000113

Axiom
annotated source: base pair orientation
annotated property: definition
annotated target: A conformation that inheres in an RNA base pair. It may be cis- or trans- depending on the orientations of the ribose rings relative to the edge-edge interaction of the nucleobases.
database_cross_reference: RNAO:ROC

base pair cis-orientation
type: Class
subclass of: base pair orientation
definition: A base pair conformation where the ribose rings are on the same side of a plane drawn through the middle of the edge-edge hydrogen bonds.
id: RNAO:0000114

Axiom
annotated source: base pair cis-orientation
annotated property: definition
annotated target: A base pair conformation where the ribose rings are on the same side of a plane drawn through the middle of the edge-edge hydrogen bonds.
database_cross_reference: RNAO:ROC

base pair trans-orientation
type: Class
subclass of: base pair orientation
definition: A base pair conformation where the ribose rings are on opposite sides of a plane drawn through the middle of the edge-edge hydrogen bonds.
id: RNAO:0000115

Axiom
annotated source: base pair trans-orientation
annotated property: definition
annotated target: A base pair conformation where the ribose rings are on opposite sides of a plane drawn through the middle of the edge-edge hydrogen bonds.
database_cross_reference: RNAO:ROC

cis-oriented base pair
type: Class
subclass of: base pair
id: RNAO:0000116

trans-oriented base pair
type: Class
subclass of: base pair
id: RNAO:0000117

collection of atoms
type: Class
subclass of: collection of material entities
id: RNAO:0000118

covalent boundary
type: Class
subclass of: boundary
id: RNAO:0000119

non-covalent boundary
type: Class
subclass of: boundary
id: RNAO:0000120

nucleoside conformation
type: Class
subclass of: conformation
definition: A conformation that inheres in an nucleoside based on the rotation of the nucleobase about the glycosidic torsion angle χ with the furanose.
id: RNAO:0000121

Axiom
annotated source: nucleoside conformation
annotated property: definition
annotated target: A conformation that inheres in an nucleoside based on the rotation of the nucleobase about the glycosidic torsion angle χ with the furanose.
database_cross_reference: RNAO:ROC

syn nucleoside conformation
type: Class
subclass of: nucleoside conformation
definition: A syn nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented towards the ribose due to rotation about the glycosidic torsion angle χ. From χ = 0°, where the plane of the base is aligned with the O4’-C1’ bond in a direction towards the O4’ atom, the syn conformation covers the remaining rotations of ±90°: χ = [-90°, 90°].
id: RNAO:0000122

Axiom
annotated source: syn nucleoside conformation
annotated property: definition
annotated target: A syn nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented towards the ribose due to rotation about the glycosidic torsion angle χ. From χ = 0°, where the plane of the base is aligned with the O4’-C1’ bond in a direction towards the O4’ atom, the syn conformation covers the remaining rotations of ±90°: χ = [-90°, 90°].
database_cross_reference: RNAO:ROC

anti nucleoside conformation
type: Class
subclass of: nucleoside conformation
definition: A anti nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented away from the ribose due to rotation about the glycosidic torsion angle χ. From χ = 180°, where the plane of the base is aligned with the O4’-C1’ bond in a direction away from the O4’ atom, the anti conformation covers a rotations of ±90°: χ = [-180°, 90°].
id: RNAO:0000123

Axiom
annotated source: anti nucleoside conformation
annotated property: definition
annotated target: A anti nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented away from the ribose due to rotation about the glycosidic torsion angle χ. From χ = 180°, where the plane of the base is aligned with the O4’-C1’ bond in a direction away from the O4’ atom, the anti conformation covers a rotations of ±90°: χ = [-180°, 90°].
database_cross_reference: RNAO:ROC

envelope conformation
type: Class
subclass of: furan ring conformation
definition: An envelope conformation is a furan ring conformation in which only one of the five fruan atoms (C1’, C2’, C3’, C4’ or O4’) is out of the plane formed by the four others.
id: RNAO:0000124

Axiom
annotated source: envelope conformation
annotated property: definition
annotated target: An envelope conformation is a furan ring conformation in which only one of the five fruan atoms (C1’, C2’, C3’, C4’ or O4’) is out of the plane formed by the four others.
database_cross_reference: RNAO:ROC

twist conformation
type: Class
subclass of: furan ring conformation
definition: An envelope conformation is a furan ring conformation in which two atoms are in opposite sides of the plane formed by the remaining three.
id: RNAO:0000125

Axiom
annotated source: twist conformation
annotated property: definition
annotated target: An envelope conformation is a furan ring conformation in which two atoms are in opposite sides of the plane formed by the remaining three.
database_cross_reference: RNAO:ROC

furan ring conformation
type: Class
subclass of: conformation
definition: A furan ring conformation is a conformation that inheres in a furan ring and is characterized by the values of torsion angles: θ0-4.
id: RNAO:0000126

Axiom
annotated source: furan ring conformation
annotated property: definition
annotated target: A furan ring conformation is a conformation that inheres in a furan ring and is characterized by the values of torsion angles: θ0-4.
database_cross_reference: RNAO:ROC

C2prime-endo pucker
type: Class
subclass of: envelope conformation
definition: C2prime-endo pucker (2E conformation) is an envelope conformation in which the C2prime atom is above the plane formed by the other 4 atoms.
id: RNAO:0000127

Axiom
annotated source: C2prime-endo pucker
annotated property: definition
annotated target: C2prime-endo pucker (2E conformation) is an envelope conformation in which the C2prime atom is above the plane formed by the other 4 atoms.
database_cross_reference: RNAO:ROC

C3prime-endo pucker
type: Class
subclass of: envelope conformation
definition: C3prime-endo pucker (An 3E conformation) is an envelope conformation in which the C3prime atom is above the plane formed by the other 4 atoms.
id: RNAO:0000128

Axiom
annotated source: C3prime-endo pucker
annotated property: definition
annotated target: C3prime-endo pucker (An 3E conformation) is an envelope conformation in which the C3prime atom is above the plane formed by the other 4 atoms.
database_cross_reference: RNAO:ROC

C4prime-exo pucker
type: Class
subclass of: envelope conformation
definition: C4prime-exo pucker (E4 conformation) is an envelope conformation in which the C4prime atom is below the plane formed by the other 4 atoms.
id: RNAO:0000129

Axiom
annotated source: C4prime-exo pucker
annotated property: definition
annotated target: C4prime-exo pucker (E4 conformation) is an envelope conformation in which the C4prime atom is below the plane formed by the other 4 atoms.
database_cross_reference: RNAO:ROC

C3prime-endo - C4prime -exo pucker
type: Class
subclass of: twist conformation
definition: C3prime-endo - C4prime exo pucker (3E4 conformation) is a twist conformation in which the C3prime atom is above the plane and the C4prime atom is below the plane.
id: RNAO:0000130

Axiom
annotated source: C3prime-endo - C4prime -exo pucker
annotated property: definition
annotated target: C3prime-endo - C4prime exo pucker (3E4 conformation) is a twist conformation in which the C3prime atom is above the plane and the C4prime atom is below the plane.
database_cross_reference: RNAO:ROC

C3prime-endo - C2prime -exo pucker
type: Class
subclass of: twist conformation
definition: C3prime-endo - C2prime exo pucker (3E2 conformation) is a twist conformation in which the C3prime atom is above the plane and the C2prime atom is below the plane.
id: RNAO:0000131

Axiom
annotated source: C3prime-endo - C2prime -exo pucker
annotated property: definition
annotated target: C3prime-endo - C2prime exo pucker (3E2 conformation) is a twist conformation in which the C3prime atom is above the plane and the C2prime atom is below the plane.
database_cross_reference: RNAO:ROC

base stack
type: Class
subclass of: snap#MaterialEntity
subclass of: Restriction
  on property: has quality
  some values from: base stack orientation
definition: A base stack consists of a pair of nucleotides that interact by London dispersion inter-molecular interactions between their nucleobases such that one base is stacked on top of the other.
id: RNAO:0000132

Axiom
annotated source: base stack
annotated property: definition
annotated target: A base stack consists of a pair of nucleotides that interact by London dispersion inter-molecular interactions between their nucleobases such that one base is stacked on top of the other.
database_cross_reference: RNAO:ROC

adjacent base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack adjacent base orientation
definition: An adjacent base stack is a base stack between a pair of sequence-adjacent nucleotides.
id: RNAO:0000133

Axiom
annotated source: adjacent base stack
annotated property: definition
annotated target: An adjacent base stack is a base stack between a pair of sequence-adjacent nucleotides.
database_cross_reference: RNAO:ROC

non-adjacent base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack non-adjacent base orientation
definition: A non-adjacent base stack is a base stack between a pair of non sequence-adjacent nucleotides.
id: RNAO:0000134

Axiom
annotated source: non-adjacent base stack
annotated property: definition
annotated target: A non-adjacent base stack is a base stack between a pair of non sequence-adjacent nucleotides.
database_cross_reference: RNAO:ROC

base stack orientation
type: Class
subclass of: conformation
definition: A base stack orientation is a conformation that inheres in a base stack by virtue of the orientation of the nucleobases relative to i) the alignment of base normals and ii) their sequence adjacency.
id: RNAO:0000135

Axiom
annotated source: base stack orientation
annotated property: definition
annotated target: A base stack orientation is a conformation that inheres in a base stack by virtue of the orientation of the nucleobases relative to i) the alignment of base normals and ii) their sequence adjacency.
database_cross_reference: RNAO:ROC

#a conformation
type: Class
subclass of: 23 conformation
id: RNAO:0000136

backbone
type: Class
subclass of: submolecule
id: RNAO:0000137

base stack straight orientation
type: Class
subclass of: base stack base-normal orientation
definition: An base stack straight orientation is a base stack orientation in which the normals of both bases are aligned in the same direction.
id: RNAO:0000138

Axiom
annotated source: base stack straight orientation
annotated property: definition
annotated target: An base stack straight orientation is a base stack orientation in which the normals of both bases are aligned in the same direction.
database_cross_reference: RNAO:ROC

base stack reverse orientation
type: Class
subclass of: base stack base-normal orientation
definition: A base stack reverse orientation is a base stack orientation in which the normals of both bases are aligned in the opposite directions.
id: RNAO:0000139

Axiom
annotated source: base stack reverse orientation
annotated property: definition
annotated target: A base stack reverse orientation is a base stack orientation in which the normals of both bases are aligned in the opposite directions.
database_cross_reference: RNAO:ROC

base stack base-normal orientation
type: Class
subclass of: base stack orientation
definition: A base stack base-normal orientation is a base stack orientation that depends on the relative orientation of the base normals.
id: RNAO:0000140

Axiom
annotated source: base stack base-normal orientation
annotated property: definition
annotated target: A base stack base-normal orientation is a base stack orientation that depends on the relative orientation of the base normals.
database_cross_reference: RNAO:ROC

molecule
type: Class
subclass of: snap#MaterialEntity
id: RNAO:0000141

base stack above orientation
type: Class
subclass of: base stack base-normal orientation
definition: A base stack above orientation is a base stack orientation in which the second base (B) is in the same direction as the normal to the first base (A).
id: RNAO:0000142

Axiom
annotated source: base stack above orientation
annotated property: definition
annotated target: A base stack above orientation is a base stack orientation in which the second base (B) is in the same direction as the normal to the first base (A).
database_cross_reference: RNAO:ROC

base stack below orientation
type: Class
subclass of: base stack base-normal orientation
definition: A base stack below orientation is a base stack orientation in which the normal of the second base (B) is directed towards the first base (A).
id: RNAO:0000143

Axiom
annotated source: base stack below orientation
annotated property: definition
annotated target: A base stack below orientation is a base stack orientation in which the normal of the second base (B) is directed towards the first base (A).
database_cross_reference: RNAO:ROC

base stack sequence adjacency
type: Class
subclass of: base stack orientation
definition: A base stack sequence adjacency is a base stack orientation that depends on whether the stacked nucleobases are part of nucleotides that are sequence adjacent or not.
id: RNAO:0000144

Axiom
annotated source: base stack sequence adjacency
annotated property: definition
annotated target: A base stack sequence adjacency is a base stack orientation that depends on whether the stacked nucleobases are part of nucleotides that are sequence adjacent or not.
database_cross_reference: RNAO:ROC

base stack adjacent base orientation
type: Class
subclass of: base stack sequence adjacency
definition: A base stack adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are sequence adjacent.
id: RNAO:0000145

Axiom
annotated source: base stack adjacent base orientation
annotated property: definition
annotated target: A base stack adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are sequence adjacent.
database_cross_reference: RNAO:ROC

base stack non-adjacent base orientation
type: Class
subclass of: base stack sequence adjacency
definition: A base stack non-adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are not sequence adjacent.
id: RNAO:0000146

Axiom
annotated source: base stack non-adjacent base orientation
annotated property: definition
annotated target: A base stack non-adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are not sequence adjacent.
database_cross_reference: RNAO:ROC

furanose ring
type: Class
subclass of: submolecule
definition: A furanose ring is a ring that consists of four carbon and one oxygen atom and has free valences at each carbon position.
id: RNAO:0000147

Axiom
annotated source: furanose ring
annotated property: definition
annotated target: A furanose ring is a ring that consists of four carbon and one oxygen atom and has free valences at each carbon position.
database_cross_reference: RNAO:ROC

upward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
definition: An upward base stack is a base stack that exhibits both an straight orientation and an above orientation.
id: RNAO:0000148

Axiom
annotated source: upward base stack
annotated property: definition
annotated target: An upward base stack is a base stack that exhibits both an straight orientation and an above orientation.
database_cross_reference: RNAO:ROC

downward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack below orientation
definition: A downward base stack is a base stack that exhibits both an straight orientation and a below orientation.
id: RNAO:0000149

Axiom
annotated source: downward base stack
annotated property: definition
annotated target: A downward base stack is a base stack that exhibits both an straight orientation and a below orientation.
database_cross_reference: RNAO:ROC

inward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
definition: An inward base stack is a base stack that exhibits both a reverse orientation and an above orientation.
id: RNAO:0000150

Axiom
annotated source: inward base stack
annotated property: definition
annotated target: An inward base stack is a base stack that exhibits both a reverse orientation and an above orientation.
database_cross_reference: RNAO:ROC

outward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
definition: An outward base stack is a base stack that exhibits both a reverse orientation and a below orientation.
id: RNAO:0000151

Axiom
annotated source: outward base stack
annotated property: definition
annotated target: An outward base stack is a base stack that exhibits both a reverse orientation and a below orientation.
database_cross_reference: RNAO:ROC

purine Hoogsteen edge
type: Class
id: RNAO:0000152

pyrimidine Hoogsteen edge
type: Class
id: RNAO:0000153

purine Watson-Crick edge
type: Class
id: RNAO:0000154

pyrimidine Watson-Crick edge
type: Class
id: RNAO:0000155

purine sugar edge
type: Class
subclass of: sugar edge
id: RNAO:0000156

pyrimidine sugar edge
type: Class
subclass of: sugar edge
id: RNAO:0000157

submolecule
type: Class
subclass of: part of molecule
subclass of: Restriction
  on property: ro.owl#part of
  some values from: molecule
definition: a submolecule is a part of a molecule that consists of covalently bonded sum of a collection of atoms.
id: RNAO:0000158

Axiom
annotated source: submolecule
annotated property: definition
annotated target: a submolecule is a part of a molecule that consists of covalently bonded sum of a collection of atoms.
database_cross_reference: RNAO:ROC

pyrimidine O4 atom
type: Class
subclass of: pyrimidine oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000159

purine C2 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000160

pyrimidine N4 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000161

purine N1 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000162

purine N6 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000163

pyrimidine O2 atom
type: Class
subclass of: pyrimidine oxygen atom
id: RNAO:0000164

pyrimidine N3 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000165

purine N3 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000166

ribose O2prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000167

RNA backbone
type: Class
subclass of: backbone
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribonucleic acid
id: RNAO:0000168

purine H2 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000169

pyrimidine H3 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000170

purine H8 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000171

purine C8 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000172

purine N7 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000173

purine H62 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000174

purine O6 atom
type: Class
subclass of: oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000175

pyrimidine H5 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000176

pyrimidine C5 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000177

pyrimidine C4 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000178

pyrimidine C6 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000179

purine H61 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000180

part of molecule
type: Class
subclass of: snap#MaterialEntity
definition: a part of molecule is some part of a molecule.
id: RNAO:0000181

Axiom
annotated source: part of molecule
annotated property: definition
annotated target: a part of molecule is some part of a molecule.
database_cross_reference: RNAO:ROC

collection of biopolymer residues
type: Class
subclass of: collection of material entities
id: RNAO:0000182

nucleobase face
type: Class
subclass of: boundary
id: RNAO:0000183

5prime face
type: Class
subclass of: nucleobase face
id: RNAO:0000184

3prime face
type: Class
subclass of: nucleobase face
id: RNAO:0000185

nucleoside residue
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: ro.owl#has part
  some values from: nucleobase
subclass of: Restriction
  on property: ro.owl#has part
  some values from: furanose ring
id: RNAO:0000186

nucleotide residue
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: ro.owl#has part
  some values from: nucleoside residue
id: RNAO:0000187

mereologically maximal object
type: Class
subclass of: snap#MaterialEntity
id: RNAO:0000188

linear RNA backbone
type: Class
subclass of: RNA backbone
id: RNAO:0000189

mereological sum of collection
type: Class
subclass of: snap#MaterialEntity
id: RNAO:0000190

boundary
type: Class
subclass of: snap#DependentContinuant
subclass of: Restriction
  on property: boundary of
  some values from: snap#MaterialEntity
definition: A boundary is a region at which connections can be formed.
id: RNAO:0000196

Axiom
annotated source: boundary
annotated property: definition
annotated target: A boundary is a region at which connections can be formed.
database_cross_reference: RNAO:ROC

backbone conformation
type: Class
subclass of: conformation
id: RNAO:0000200

nucleic acid
type: Class
subclass of: molecule
id: RNAO:0000201

external boundary
type: Class
subclass of: boundary
id: RNAO:0000203

ribose O3prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000216

ribose C3prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000217

terminal boundary of linear biopolymer
type: Class
subclass of: boundary
id: RNAO:0000219

uracil O4 atom
type: Class
subclass of: pyrimidine O4 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Hoogsteen edge
id: RNAO:0000400

cytosine O2 atom
type: Class
subclass of: pyrimidine O2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine sugar edge
id: RNAO:0000401

uracil O2 atom
type: Class
subclass of: pyrimidine O2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine sugar edge
id: RNAO:0000402

guanine O6 atom
type: Class
subclass of: purine O6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Hoogsteen edge
id: RNAO:0000403

adenine C2 atom
type: Class
subclass of: purine C2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine sugar edge
id: RNAO:0000404

adenine C8 atom
type: Class
subclass of: purine C8 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Hoogsteen edge
id: RNAO:0000406

guanine C8 atom
type: Class
subclass of: purine C8 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Hoogsteen edge
id: RNAO:0000407

cytosine C5 atom
type: Class
subclass of: pyrimidine C5 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000408

uracil C5 atom
type: Class
subclass of: pyrimidine C5 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Hoogsteen edge
id: RNAO:0000409

cytosine C4 atom
type: Class
subclass of: pyrimidine C4 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
id: RNAO:0000410

uracil C4 atom
type: Class
subclass of: pyrimidine C4 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
id: RNAO:0000411

uracil C6 atom
type: Class
subclass of: pyrimidine C6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Hoogsteen edge
id: RNAO:0000412

cytosine C6 atom
type: Class
subclass of: pyrimidine C6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000413

adenine H2 atom
type: Class
subclass of: purine H2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine sugar edge
id: RNAO:0000414

cytosine N4 atom
type: Class
subclass of: pyrimidine N4 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000415

adenine N1 atom
type: Class
subclass of: purine N1 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Watson-Crick edge
id: RNAO:0000416

adenine N6 atom
type: Class
subclass of: purine N6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Hoogsteen edge
id: RNAO:0000417

cytosine N3 atom
type: Class
subclass of: pyrimidine N3 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Watson-Crick edge
id: RNAO:0000418

uracil N3 atom
type: Class
subclass of: pyrimidine N3 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Watson-Crick edge
id: RNAO:0000419

adenine N3 atom
type: Class
subclass of: purine N3 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine sugar edge
id: RNAO:0000420

guanine C2 atom
type: Class
subclass of: purine C2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
id: RNAO:0000422

uracil H3 atom
type: Class
subclass of: pyrimidine H3 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Watson-Crick edge
id: RNAO:0000423

guanine H8 atom
type: Class
subclass of: purine H8 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Hoogsteen edge
id: RNAO:0000424

adenine H8 atom
type: Class
subclass of: purine H8 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Hoogsteen edge
id: RNAO:0000425

adenine H62 atom
type: Class
subclass of: purine H62 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Hoogsteen edge
id: RNAO:0000426

cytosine H5 atom
type: Class
subclass of: pyrimidine H5 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000427

uracil H5 atom
type: Class
subclass of: pyrimidine H5 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Hoogsteen edge
id: RNAO:0000428

adenine H61 atom
type: Class
subclass of: purine H61 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
id: RNAO:0000430

guanine N1 atom
type: Class
subclass of: purine N1 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Watson-Crick edge
id: RNAO:0000431

guanine N3 atom
type: Class
subclass of: purine N3 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine sugar edge
id: RNAO:0000432

adenine N7 atom
type: Class
subclass of: purine N7 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenosine Hoogsteen edge
id: RNAO:0000433

guanine N7 atom
type: Class
subclass of: purine N7 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Hoogsteen edge
id: RNAO:0000434

pyrimidine H6 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000437

cytosine H6 atom
type: Class
subclass of: pyrimidine H6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000438

uracil H6 atom
type: Class
subclass of: pyrimidine H6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine Hoogsteen edge
id: RNAO:0000439

purine N9 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000440

adenine N9 atom
type: Class
subclass of: purine N9 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
id: RNAO:0000441

guanine N9 atom
type: Class
subclass of: purine N9 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
id: RNAO:0000442

purine N2 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000443

guanine N2 atom
type: Class
subclass of: purine N2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine sugar edge
id: RNAO:0000444

purine H21 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000445

purine H22 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000446

guanine H22 atom
type: Class
subclass of: purine H22 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine sugar edge
id: RNAO:0000447

guanine H21 atom
type: Class
subclass of: purine H21 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Watson-Crick edge
id: RNAO:0000448

pyrimidine H41 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000449

pyrimidine H42 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000450

cytosine H42 atom
type: Class
subclass of: pyrimidine H42 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Hoogsteen edge
id: RNAO:0000451

cytosine H41 atom
type: Class
subclass of: pyrimidine H41 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine Watson-Crick edge
id: RNAO:0000452

ribose O4prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000453

ribose O5prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000454

ribose C1prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000455

ribose C2prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000456

ribose C4prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000457

ribose C5prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000458

ribose H1prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000460

ribose H2prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000461

ribose H3prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000462

ribose H4prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000463

ribose H51prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000464

ribose H52prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000465

ribose OH2prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000466

ribose OH3prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000467

ribose OH5prime atom
type: Class
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000468

phosphate moiety O1P atom
type: Class
subclass of: phosphate moiety oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: phosphate moiety
id: RNAO:0000469

phosphate moiety O2P atom
type: Class
subclass of: phosphate moiety oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: phosphate moiety
id: RNAO:0000470

phosphate moiety phosphate atom
type: Class
subclass of: phosphorous atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: phosphate moiety
id: RNAO:0000471

adenosine Watson-Crick edge
type: Class
subclass of: purine Watson-Crick edge
id: RNAO:0000472

guanosine Watson-Crick edge
type: Class
subclass of: purine Watson-Crick edge
id: RNAO:0000473

cytidine Watson-Crick edge
type: Class
subclass of: pyrimidine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytosine nucleobase
id: RNAO:0000474

uridine Watson-Crick edge
type: Class
subclass of: pyrimidine Watson-Crick edge
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uracil nucleobase
id: RNAO:0000475

adenine nucleobase functional derivative
type: Class
subclass of: purine nucleobase functional derivative
id: RNAO:0000476

guanine nucleobase functional derivative
type: Class
subclass of: purine nucleobase functional derivative
id: RNAO:0000477

cytosine nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase functional derivative
id: RNAO:0000478

uracil nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase functional derivative
id: RNAO:0000479

adenosine Hoogsteen edge
type: Class
subclass of: purine Hoogsteen edge
id: RNAO:0000500

guanosine Hoogsteen edge
type: Class
subclass of: purine Hoogsteen edge
id: RNAO:0000501

cytidine Hoogsteen edge
type: Class
subclass of: pyrimidine Hoogsteen edge
id: RNAO:0000502

uridine Hoogsteen edge
type: Class
subclass of: pyrimidine Hoogsteen edge
id: RNAO:0000503

adenosine sugar edge
type: Class
subclass of: purine sugar edge
id: RNAO:0000504

guanosine sugar edge
type: Class
subclass of: purine sugar edge
id: RNAO:0000505

cytidine sugar edge
type: Class
subclass of: pyrimidine sugar edge
id: RNAO:0000506

uridine sugar edge
type: Class
subclass of: pyrimidine sugar edge
id: RNAO:0000507

purine C6 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000508

guanine C6 atom
type: Class
subclass of: purine C6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
id: RNAO:0000509

adenine C6 atom
type: Class
subclass of: purine C6 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: adenine nucleobase
id: RNAO:0000510

purine carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000511

ribose carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: ribose ring
id: RNAO:0000512

imidazopurine carbon atom
type: Class
subclass of: carbon atom
id: RNAO:0000513

pyrimidine carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000514

pyrimidine C2 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000515

cytosine C2 atom
type: Class
subclass of: pyrimidine C2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000516

uracil C2 atom
type: Class
subclass of: pyrimidine C2 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000517

purine hydrogen atom
type: Class
subclass of: hydrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000518

pyrimidine hydrogen atom
type: Class
subclass of: hydrogen atom
id: RNAO:0000519

phosphate moiety oxygen atom
type: Class
subclass of: oxygen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: phosphate moiety
id: RNAO:0000520

ribose oxygen atom
type: Class
subclass of: oxygen atom
id: RNAO:0000521

pyrimidine oxygen atom
type: Class
subclass of: oxygen atom
id: RNAO:0000522

purine nitrogen atom
type: Class
subclass of: nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: purine nucleobase
id: RNAO:0000523

pyrimidine nitrogen atom
type: Class
subclass of: nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000524

ribose hydrogen atom
type: Class
subclass of: hydrogen atom
id: RNAO:0000525

purine H1 atom
type: Class
subclass of: purine hydrogen atom
id: RNAO:0000526

guanine H1 atom
type: Class
subclass of: purine H1 atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: ro.owl#part of
  some values from: guanosine Watson-Crick edge
id: RNAO:0000527

cytidine ribose O 2prime atom
type: Class
subclass of: ribose O2prime atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine residue
subclass of: Restriction
  on property: ro.owl#part of
  some values from: cytidine sugar edge
id: RNAO:0000528

uridine ribose O 2prime atom
type: Class
subclass of: ribose O2prime atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine residue
subclass of: Restriction
  on property: ro.owl#part of
  some values from: uridine sugar edge
id: RNAO:0000529

pyrimidine N1 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: ro.owl#part of
  some values from: pyrimidine nucleobase
id: RNAO:0000530

adenosine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue functional derivative
id: RNAO:0000531

guanosine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue functional derivative
id: RNAO:0000532

cytidine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue functional derivative
id: RNAO:0000533

uridine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue functional derivative
id: RNAO:0000534

adenylate residue functional derivative
type: Class
subclass of: purine ribonucleotide functional derivative
id: RNAO:0000535

guanylate residue functional derivative
type: Class
subclass of: purine ribonucleotide functional derivative
id: RNAO:0000536

cytidylate residue functional derivative
type: Class
subclass of: pyrimidine ribonucleotide functional derivative
id: RNAO:0000537

uridylate residue functional derivative
type: Class
subclass of: pyrimidine ribonucleotide functional derivative
id: RNAO:0000538

purine nucleobase functional derivative
type: Class
subclass of: purine nucleobase
id: RNAO:1000014

pyrimidine nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase
id: RNAO:1000015

purine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue
id: RNAO:1000016

pyrimidine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue
id: RNAO:1000017

purine ribonucleotide functional derivative
type: Class
subclass of: purine ribonucleotide
id: RNAO:1000018

pyrimidine ribonucleotide functional derivative
type: Class
subclass of: pyrimidine ribonucleotide
id: RNAO:1000019

ribose ring functional derivative
type: Class
subclass of: ribose ring
id: RNAO:1000020

phosphate moiety functional derivative
type: Class
subclass of: phosphate moiety
id: RNAO:1000021

5prime cap structure
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: has boundary
  some values from: 5prime end
id: RNAO:1000022

N6-methyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000024

2prime-O-methylribose ring
type: Class
subclass of: ribose ring functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: ribose ring
id: RNAO:1000030

N6-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000034

inosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000035

dihydrouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000036

2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000037

2prime-O-methyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000038

2prime-O-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000039

1-methyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000040

1-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000041

2-methyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000042

2-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000043

N6,N6-dimethyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000044

N6,N6-dimethyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000045

1,2prime-O-dimethyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000047

1,2prime-O-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000048

N6,2prime-O-dimethyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000050

N6,2prime-O-dimethyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000051

N6,N6,2prime-O-trimethyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000053

N6,N6,2prime-O-trimethyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000054

1-methylhypoxanthine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000055

1-methylinosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000056

2prime-O-methylinosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000057

2prime-O-methylinosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000058

1,2prime-O-dimethylinosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000059

1,2prime-O-dimethylinosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000060

2prime-O-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000061

3-methylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000062

3-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000064

N4-methylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000065

N4-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000066

N4-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000067

5-methylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000068

5-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000069

N4,2prime-O-dimethylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000070

N4,2prime-O-dimethylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000071

N4,N4-dimethylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000072

N4,N4-dimethylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000073

N4,N4-dimethylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000074

N4,N4,2prime-O-trimethylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000075

N4,N4,2prime-O-trimethylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000076

5,2prime-O-dimethylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000077

5,2prime-O-dimethylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000078

2prime-O-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000080

1-methylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000081

1-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000082

N2-methylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000084

N2-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000085

N2,N2-dimethylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000086

N2,N2-dimethylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000087

N2,N2,2prime-O-trimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000088

N2,N2,2prime-O-trimethylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000089

7-methylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000090

7-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000091

N2,7-dimethylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000092

N2,7-dimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000093

N2,7-dimethylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000094

N2,N2,7-trimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000095

N2,N2,7-trimethylguanine nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000096

N2,N2,7-trimethylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000097

1,2prime-O-dimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000098

1,2prime-O-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000099

N2,2prime-O-dimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000100

N2,2prime-O-methylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000101

3-methyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000102

3-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000103

3-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000104

5-methyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000105

5-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000106

5-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000107

3,2prime-O-dimethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000108

3,2prime-O-dimethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000109

5,2prime-O-dimethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000110

5,2prime-O-dimethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000111

2-methylthio-N6-methyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000112

2-methylthio-N6-methyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000113

2-methylthio-N6-methyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000114

N6-acetyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000115

N6-acetyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000116

N6-acetyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000117

2-thiocytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000118

2-thiocytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000120

N4-acetylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000121

N4-acetylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000122

N4-acetyl-2prime-O-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000123

N4-acetyl-2prime-O-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000124

5-formylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000125

5-formylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000126

5-formylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000127

5-formyl-2prime-O-methylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000128

5-formyl-2prime-O-methylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000129

2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000130

2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000131

2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000132

4-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000133

4-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000135

2-selenouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000136

2-selenouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000137

2-selenouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000138

2-thio-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000139

2-thio-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000140

5-methyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000141

5-methyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000142

5-formyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000143

5-formyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000144

5-formyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000145

5-formyl-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000146

5-formyl-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000147

5-formyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000148

5-formyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000149

5-formyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000150

5-formyl-2-selenouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000151

5-formyl-2-selenouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000152

5-formyl-2-selenouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000153

5-methyl-5,6-dihydrouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000154

5-methyldihydrouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000155

5-methyldihydrouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000156

5-hydroxymethylcytosine nucleobase
type: Class
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase
id: RNAO:1000157

5-hydroxymethylcytidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000158

5-hydroxymethylcytidylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000159

5-hydroxyuracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000160

5-hydroxyuridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000161

5-hydroxyuridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000162

5-methoxyuracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000163

5-methoxyuridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000165

5-carboxymethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000166

5-carboxymethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000167

5-carboxymethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000168

5-carboxymethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000169

5-carboxymethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000170

5-carboxymethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000171

5-carboxymethylaminomethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000172

5-carboxymethylaminomethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000173

5-carboxymethylaminomethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000174

5-carboxymethylaminomethyl-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000175

5-carboxymethylaminomethyl-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000176

5-carboxymethylaminomethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000177

5-carboxymethylaminomethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000178

5-carboxymethylaminomethyl-2-selenouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000179

5-carboxymethylaminomethyl-2-selenouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000180

5-carboxymethylaminomethyl-2-selenouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000181

5-aminomethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000182

5-aminomethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000183

5-aminomethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000184

5-methylaminomethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000185

5-aminomethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000186

5-aminomethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000187

5-methylaminomethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000188

5-aminomethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000189

5-methylaminomethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000190

5-methylaminomethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000191

5-methylaminomethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000192

5-methylaminomethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000193

5-aminomethyl-2-selenouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000195

5-aminomethyl-2-selenouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000196

5-aminomethyl-2-selenouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000197

5-methylaminomethyl-2-selenouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000198

5-methylaminomethyl-2-selenouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000199

5-methylaminomethyl-2-selenouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000200

5-carbamoylmethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000201

5-carbamoylmethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000202

5-carbamoylmethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000203

5-carbamoylmethyl-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000204

5-carbamoylmethyl-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000205

N6-threonylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000206

N6-threonylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000207

N6-threonylcarbamoyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000208

N6-methyl-N6-threonylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000209

N6-methyl-N6-threonylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000210

N6-methyl-N6-threonylcarbamoyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000211

2-methylthio-N6-threonylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000212

2-methylthio-N6-threonylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000213

2-methylthio-N6-threonylcarbamoyladenosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000214

N6-glycinylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000215

N6-glycinylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000216

N6-glycinylcarbamoyladenosylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000217

pseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000219

5-taurinomethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000220

5-taurinomethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000221

5-taurinomethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000222

5-taurinomethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000223

5-taurinomethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000224

lysidinylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000225

5-taurinomethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000226

lysidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000227

2prime-O-(5-phosphoribosyl)ribose ring
type: Class
subclass of: ribose ring functional derivative
id: RNAO:1000228

2prime-O-ribosyladenylate phosphate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000229

2prime-O-ribosyladenosine phosphate residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000230

2prime-O-ribosylguanosine phosphate residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000231

2prime-O-ribosylguanylate phosphate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000232

N6-isopentenyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000233

N6-isopentenyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000234

N6-isopentenyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000235

2-methylthio-N6-isopentenyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000236

2-methylthio-N6-isopentenyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000237

2prime-O-methylpseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000238

3-methylpseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000239

3-methylpseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000240

1-methyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000241

1-methylpseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000243

5-methoxycarbonylmethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000244

5-methoxycarbonylmethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000245

5-methoxycarbonylmethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000246

5-methoxycarbonylmethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000247

5-methoxycarbonylmethyl-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000248

5-methoxycarbonylmethyl-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000249

3-(3-amino-3-carboxypropyl)uridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000250

3-(3-amino-3-carboxypropyl)methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000251

3-(3-amino-3-carboxypropyl)methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000252

1-methyl-3-(3-amino-3-carboxypropyl)uracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000253

1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000254

1-methyl-3-(3-amino-3-carboxypropyl)pseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000255

5-(carboxyhydroxymethyl)uracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000256

5-(carboxyhydroxymethyl)uridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000257

uracil 5-oxyaceticacid nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000258

uridylate 5-oxyacetic acid residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000259

uracil 5-oxyaceticacid methyl ester nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000260

uridine 5-oxyacetic acid methyl ester residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000261

uridylate 5-oxyacetic acid methyl ester residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000262

5-(carboxyhydroxymethyl)uracil methyl ester nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000263

5-(carboxyhydroxymethyl)uridine methyl ester residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000264

5-(carboxyhydroxymethyl)uridylate methyl ester residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000265

N6-(cis-hydroxyisopentenyl)adenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000266

N6-(cis-hydroxyisopentenyl)adenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000267

N6-(cis-hydroxyisopentenyl)adenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000268

2-methylthio-N6-(cis-hydroxyisopentenyl)adenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000269

2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000270

2-methylthio-N6-(cis-hydroxyisopentenyl)adenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000271

norvalyl group
type: Class
subclass of: group
id: RNAO:1000272

N6-hydroxynorvalylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000273

N6-hydroxynorvalylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000274

N6-hydroxynorvalylcarbamoyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000275

2-methylthio-N6-hydroxynorvalylcarbamoyladenine nucleobase
type: Class
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
id: RNAO:1000276

2-methylthio-N6-hydroxynorvalylcarbamoyladenosine residue
type: Class
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue
id: RNAO:1000277

2-methylthio-N6-hydroxynorvalylcarbamoyladenylate residue
type: Class
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
id: RNAO:1000278

agmatinyl group
type: Class
subclass of: group
id: RNAO:1000281

agmatidinylate residue
type: Class
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue
id: RNAO:1000282

agmatidine residue
type: Class
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue
id: RNAO:1000283

N2,7,2prime-O-trimethylguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000284

N2,7,2prime-O-trimethylguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000285

5-isopentenylaminomethyluracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000286

5-isopentenylaminomethyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000287

5-isopentenylaminomethyl-2prime-O-methyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000288

5-isopentenylaminomethyluridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
id: RNAO:1000289

5-isopentenylaminomethyl-2prime-O-methyluridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000290

5-isopentenylaminomethyl-2-thiouracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:1000291

5-isopentenylaminomethyl-2-thiouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue
id: RNAO:1000292

5-isopentenylaminomethyl-2-thiouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
id: RNAO:1000293

wyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000294

wyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000295

methylwyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000296

imidazopurine C7 atom
type: Class
subclass of: imidazopurine carbon atom
id: RNAO:1000297

methylwyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000298

archaeosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000299

carboxamidine group
type: Class
subclass of: group
id: RNAO:1000300

7-deazapurine C7 atom
type: Class
subclass of: carbon atom
id: RNAO:1000301

archaeosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000302

7-cyano-7-deazaguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000303

7-cyano-7-deazaguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000304

7-aminomethyl-7-deazaguanosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000305

7-aminomethyl-7-deazaguanylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000306

preQ1base nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000307

cyclopentenediolyl group
type: Class
subclass of: group
id: RNAO:1000308

Qbase nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000309

queuosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000310

queuosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000311

mannosyl-Qbase nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000312

mannosyl-queuosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000313

mannosyl-queuosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000314

galactosyl-Qbase nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000315

galactosyl-queuosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000316

galactosyl-queuosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000317

glutamyl-Qbase nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000318

gluQ residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000319

gluQylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000320

imidazopurine C6 atom
type: Class
subclass of: imidazopurine carbon atom
id: RNAO:1000321

imidazopurine N4 atom
type: Class
subclass of: nitrogen atom
id: RNAO:1000322

4-demethylwyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000323

4-demethylwyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000324

isowyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000325

isowyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000326

undermodified hydroxywybutosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000327

undermodified hydroxywybutosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000328

10-glutamylwyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000329

10-glutamylwyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000330

10-glutamyl-4-demethylwyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000331

10-glutamyl-4-demethylwyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000333

10-glutamylmethylesterwyosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000334

10-glutamylmethylesterwyosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000335

2,3-epoxycyclopenta-(4,5-diol)-1-yl group
type: Class
subclass of: group
id: RNAO:1000336

epoxy-Qbase nucleobase
type: Class
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase
id: RNAO:1000337

epoxyqueuosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000338

epoxyqueuosinylate residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000339

7-methylguanosine cap structure
type: Class
subclass of: 5prime cap structure
id: RNAO:1000350

N2,N2,7-trimethylguanosine cap structure
type: Class
subclass of: 5prime cap structure
id: RNAO:1000351

gamma-methylphosphate cap structure
type: Class
subclass of: 5prime cap structure
id: RNAO:1000352

wybutosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000353

hydroxywybutosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000354

peroxywybutosine residue
type: Class
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue
id: RNAO:1000355

wybutosinyl residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000356

hydroxywybutosinyl residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000357

peroxywybutosinyl residue
type: Class
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue
id: RNAO:1000358

3-(3-amino-3-carboxypropyl)uracil nucleobase
type: Class
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase
id: RNAO:100249

snap#DependentContinuant
type: Class
id: snap#DependentContinuant

snap#MaterialEntity
type: Class
id: snap#MaterialEntity

snap#Quality
type: Class
id: snap#Quality